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1

Ruthenium-Catalyzed Azide Alkyne Cycloaddition Reaction: Scope, Mechanism, and Applications

Johansson, Johan R., Beke-Somfai, Tamás, Said Stålsmeden, Anna, Kann, Nina

Journal:

Chemical Reviews

Year:

2016

Language:

english

File:

PDF, 3.92 MB

english, 2016

2

Revealing Molecular-Level Interaction between a Polymeric Drug and Model Membrane via SFG and Microfluidics

Wang, Chu, Luo, Yongsheng, Li, Xu, Zhang, Furong, Wang, Feng, Han, Xiaofeng, Wang, Ting, Beke-Somfai, TamÃ¡s, Lu, Xiaolin

Journal:

Year:

2020

Language:

english

File:

PDF, 659 KB

english, 2020

3

Exploiting diverse stereochemistry of β-amino acids: toward a rational design of sheet-forming β-peptide systems

Pohl, Gábor, Beke-Somfai, Tamás, Csizmadia, Imre G., Perczel, András

Journal:

Year:

2012

Language:

english

File:

PDF, 801 KB

english, 2012

4

Energy phase shift as mechanism for catalysis

Tamás Beke-Somfai, Bobo Feng, Bengt Nordén

Journal:

Chemical Physics Letters

Year:

2012

Language:

english

File:

PDF, 422 KB

english, 2012

5

Zipper-Like Unfolding of β-Sheets Accessed by Pioneer Water Molecules: Atomic Resolution of Forced Unfold Reveals Different Mechanisms for Parallel and Antiparallel Motifs

Beke-Somfai, Tamás, Perczel, András

Journal:

The Journal of Physical Chemistry Letters

Year:

2010

Language:

english

File:

PDF, 877 KB

english, 2010

6

Spectral Properties and Orientation of Voltage-Sensitive Dyes in Lipid Membranes

Matson, Maria, Carlsson, Nils, Beke-Somfai, Tamás, Nordén, Bengt

Journal:

Year:

2012

Language:

english

File:

PDF, 807 KB

english, 2012

7

Mechanical Control of ATP Synthase Function: Activation Energy Difference between Tight and Loose Binding Sites

Beke-Somfai, Tamás, Lincoln, Per, Nordén, Bengt

Journal:

Year:

2010

Language:

english

File:

PDF, 1.16 MB

english, 2010

8

δ-Peptides from RuAAC-Derived 1,5-Disubstituted Triazole Units

Johansson, Johan R., Hermansson, Elin, Nordén, Bengt, Kann, Nina, Beke-Somfai, Tamás

Journal:

European Journal of Organic Chemistry

Year:

2014

Language:

english

File:

PDF, 792 KB

english, 2014

9

High anisotropy of flow-aligned bicellar membrane systems

Kogan, Maxim, Nordén, Bengt, Beke-Somfai, Tamás

Journal:

Chemistry and Physics of Lipids

Year:

2013

Language:

english

File:

PDF, 2.96 MB

english, 2013

10

Michler’s Hydrol Blue: A Sensitive Probe for Amyloid Fibril Detection

Kitts, Catherine C., Beke-Somfai, Tamás, Nordén, Bengt

Journal:

Year:

2011

Language:

english

File:

PDF, 3.60 MB

english, 2011

11

UV Transition Moments of Tyrosine

Fornander, Louise H., Feng, Bobo, Beke-Somfai, Tamás, Nordén, Bengt

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 835 KB

english, 2014

12

Shear-Induced Membrane Fusion in Viscous Solutions

Kogan, Maxim, Feng, Bobo, Nordén, Bengt, Rocha, Sandra, Beke-Somfai, Tamás

Journal:

Year:

2014

Language:

english

File:

PDF, 696 KB

english, 2014

13

Characterization of the Thermal and Photoinduced Reactions of Photochromic Spiropyrans in Aqueous Solution

Hammarson, Martin, Nilsson, Jesper R., Li, Shiming, Beke-Somfai, Tamás, Andréasson, Joakim

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

14

Interactions of a Photochromic Spiropyran with Liposome Model Membranes

Jonsson, Fabian, Beke-Somfai, Tamás, Andréasson, Joakim, Nordén, Bengt

Journal:

Year:

2013

Language:

english

File:

PDF, 744 KB

english, 2013

15

Flow-alignment of bicellar lipid mixtures: orientations of probe molecules and membrane-associated biomacromolecules in lipid membranes studied with polarized light

Kogan, Maxim, Beke-Somfai, Tamás, Nordén, Bengt

Journal:

Chemical Communications

Year:

2011

Language:

english

File:

PDF, 1.21 MB

english, 2011

16

Orientation of aromatic residues in amyloid cores: Structural insights into prion fiber diversity

Reymer, Anna, Frederick, Kendra K., Rocha, Sandra, Beke-Somfai, Tamás, Kitts, Catherine C., Lindquist, Susan, Nordén, Bengt

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 898 KB

english, 2014

17

Conformational properties of 1,4- and 1,5-substituted 1,2,3-triazole amino acids – building units for peptidic foldamers

Kann, Nina, Johansson, Johan R., Beke-Somfai, Tamás

Journal:

Organic & Biomolecular Chemistry

Year:

2015

Language:

english

File:

PDF, 670 KB

english, 2015

18

ATP Hydrolysis in the RecA–DNA Filament Promotes Structural Changes at the Protein–DNA Interface

Reymer, Anna, Babik, Sándor, Takahashi, Masayuki, Nordén, Bengt, Beke-Somfai, Tamás

Journal:

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

19

Double-lock ratchet mechanism revealing the role of αSER-344 in FoF₁ ATP synthase

Tamás Beke-Somfai, Per Lincoln, Bengt Nordén and Peter H. von Hippel

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.31 MB

english, 2011

20

Probing Microscopic Orientation in Membranes by Linear Dichroism

Rocha, Sandra, Kogan, Maxim, Beke-Somfai, Tamás, Nordén, Bengt

Journal:

Year:

2016

Language:

english

File:

PDF, 1.19 MB

english, 2016

21

Dimeric binding of plant alkaloid ellipticine to human serum proteins

Zsila, Ferenc, Beke-Somfai, Tamás

Journal:

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

22

Characterization of extracellular vesicles by IR spectroscopy: Fast and simple classification based on amide and CH stretching vibrations

Mihály, Judith, Deák, Róbert, Szigyártó, Imola Csilla, Bóta, Attila, Beke-Somfai, Tamás, Varga, Zoltán

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2017

Language:

english

File:

PDF, 957 KB

english, 2017

23

Structural features of human DJ-1 in distinct Cys106 oxidative states and their relevance to its loss of function in disease

Kiss, Róbert, Zhu, Max, Jójárt, Balázs, Czajlik, András, Solti, Katalin, Fórizs, Balázs, Nagy, Éva, Zsila, Ferenc, Beke-Somfai, Tamás, Tóth, Gergely

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

24

Drug and dye binding induced folding of the intrinsically disordered antimicrobial peptide CM15

Zsila, Ferenc, Bősze, Szilvia, Horváti, Kata, Szigyártó, Imola Cs., Beke-Somfai, Tamás

Journal:

Year:

2017

Language:

english

File:

PDF, 722 KB

english, 2017

25

Hemin and bile pigments are the secondary structure regulators of intrinsically disordered antimicrobial peptides

Zsila, Ferenc, Juhász, Tünde, Bősze, Szilvia, Horváti, Kata, Beke-Somfai, Tamás

Journal:

Year:

2017

Language:

english

File:

PDF, 412 KB

english, 2017

26

Flow-Alignment of Extracellular Vesicles: Structure and Orientation of Membrane Associated Biomacromolecules Studied with Polarized Light

Szigyarto, Imola Cs., Deák, Róbert, Mihály, Judith, Rocha, Sandra, Zsila, Ferenc, Varga, Zoltán, Beke-Somfai, Tamás

Journal:

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

27

Heparin and Heparan Sulfate Binding of the Antiparasitic Drug Imidocarb: Circular Dichroism Spectroscopy, Isothermal Titration Calorimetry, and Computational Studies

Zsila, Ferenc, Juhász, Tünde, Kohut, Gergely, Beke-Somfai, Tamás

Journal:

Journal of Physical Chemistry B

Year:

2018

Language:

english

File:

PDF, 3.18 MB

english, 2018

28

Molecular dynamics-based model of VEGF-A and its heparin interactions

Uciechowska-Kaczmarzyk, Urszula, Babik, Sándor, Zsila, Ferenc, Bojarski, Krzysztof Kamil, Beke-Somfai, Tamás, Samsonov, Sergey A.

Journal:

Journal of Molecular Graphics and Modelling

Year:

2018

Language:

english

File:

PDF, 2.81 MB

english, 2018

29

Protein-Ligand Interaction Energy-Based Entropy Calculations: Fundamental Challenges for Flexible Systems

Kohut, Gergely, Liwo, Adam, Bosze, Szilvia Erika, Beke-Somfai, Tamás, Samsonov, Sergey A.

Journal:

Journal of Physical Chemistry B

Year:

2018

Language:

english

File:

PDF, 1.14 MB

english, 2018

30

The lipid mediator lysophosphatidic acid induces folding of disordered peptides with basic amphipathic character into rare conformations

Juhász, Tünde, Mihály, Judith, Kohut, Gergely, Németh, Csaba, Liliom, Károly, Beke-Somfai, Tamás

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.24 MB

english, 2018

31

Disorder-to-helix conformational conversion of the human immunomodulatory peptide LL-37 induced by antiinflammatory drugs, food dyes and some metabolites

Zsila, Ferenc, Kohut, Gergely, Beke-Somfai, Tamás

Journal:

International Journal of Biological Macromolecules

Year:

2019

File:

PDF, 2.43 MB

2019

32

Improved Modeling of Peptidic Foldamers using a Quantum Chemical Parametrisation Based on Torsional Minimum Energy Path Matching

Wacha, András, Beke-Somfai, Tamás, Nagy, Tibor

Journal:

Year:

2019

Language:

english

File:

PDF, 2.65 MB

english, 2019

33

Revealing Interfacial Lipid Hydrolysis Catalyzed by Phospholipase A1 at Molecular-Level Via Sum Frequency Generation Vibrational Spectroscopy and Fluorescence Microscopy

Wang, Feng, Li, Xu, Zhang, Furong, Liu, Xiaoyang, Hu, Pengcheng, Beke-Somfai, Tamás, Lu, Xiaolin

Journal:

Year:

2019

Language:

english

File:

PDF, 859 KB

english, 2019

34

Revealing Interfacial Lipid Hydrolysis Catalyzed by Phospholipase A1 at Molecular-Level Via Sum Frequency Generation Vibrational Spectroscopy and Fluorescence Microscopy

Wang, Feng, Li, Xu, Zhang, Furong, Liu, Xiaoyang, Hu, Pengcheng, Beke-Somfai, Tamás, Lu, Xiaolin

Journal:

Year:

2019

File:

PDF, 859 KB

2019

35

FoldamerDB: a database of peptidic foldamers

Nizami, Bilal, Bereczki-Szakál, Dorottya, Varró, Nikolett, el Battioui, Kamal, Nagaraj, Vignesh U, Szigyártó, Imola Cs, Mándity, István, Beke-Somfai, Tamás

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 1.78 MB

english, 2019

36

FoldamerDB: a database of peptidic foldamers

Nizami, Bilal, Bereczki-Szakál, Dorottya, Varró, Nikolett, el Battioui, Kamal, Nagaraj, Vignesh U, Szigyártó, Imola Cs, Mándity, István, Beke-Somfai, Tamás

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 1.78 MB

2019

37

Nanoerythrosomes tailoring: Lipid induced protein scaffolding in ghost membrane derived vesicles

Deák, Róbert, Mihály, Judith, Szigyártó, Imola Cs., Beke-Somfai, Tamás, Turiák, Lilla, Drahos, László, Wacha, András, Bóta, Attila, Varga, Zoltán

Journal:

Materials Science and Engineering: C

Year:

2019

Language:

english

File:

PDF, 1.89 MB

english, 2019

38

Nanoerythrosomes tailoring: Lipid induced protein scaffolding in ghost membrane derived vesicles

Deák, Róbert, Mihály, Judith, Szigyártó, Imola Cs., Beke-Somfai, Tamás, Turiák, Lilla, Drahos, László, Wacha, András, Bóta, Attila, Varga, Zoltán

Journal:

Materials Science and Engineering: C

Year:

2019

File:

PDF, 1.89 MB

2019

39

Chiral 1,5-disubstituted 1,2,3-triazoles â versatile tools for foldamers and peptidomimetic applications

Said StÃ¥lsmeden, Anna, Paterson, Andrew James, SzigyÃ¡rtÃ³, Imola Csilla, Thunberg, Linda, Johansson, Johan R., Beke-Somfai, TamÃ¡s, Kann, Nina

Journal:

Organic & Biomolecular Chemistry

Year:

2020

Language:

english

File:

PDF, 1.32 MB

english, 2020

40

Human host-defense peptide LL-37 targets stealth siderophores

Zsila, Ferenc, Beke-Somfai, TamÃ¡s

Journal:

Biochemical and Biophysical Research Communications

Year:

2020

File:

PDF, 1.06 MB

2020

41

ConjuPepDB: a database of peptideâdrug conjugates

Balogh, BalÃ¡zs, IvÃ¡nczi, MÃ¡rton, Nizami, Bilal, Beke-Somfai, TamÃ¡s, MÃ¡ndity, IstvÃ¡nÂ M

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 3.92 MB

2020

42

Michlerâs hydrol blue elucidates structural differences in prion strains

Xiao, Yiling, Rocha, Sandra, Kitts, Catherine C., Reymer, Anna, Beke-Somfai, TamÃ¡s, Frederick, Kendra K., NordÃ©n, Bengt

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 843 KB

2020

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